Plant Crops Bioenergy Research UK

Temperate woody tree species with C₃ photosynthetic pathway

Potential model for

Reed Canary grass and Switch Grass

Underway (2007) - link

Early released data - link

Complete - link

Resources

• Mapping populations

• Molecular markers

• QTL

• Germplasm

• Brachypodium.org - link

• Brachypodium at Gramene - link

• Molecular markers via Gramene - link

• Brachiomics at Aberdeen University - link

• Germplasm collection via Brachiomics at Aberdeen University - link

• Accessions - link

• The sorghum project at the Laboratory for Genomics and Bioinformatics - link

• Sorghum at Gramene - link

• Molecular markers via Gramene - link

• Germplasm collection via Gramene- link

• Sorghum at the comparative grass genomics centre - link

• Popyomics - link

• Association mapping populations - link

• Molecular markers - link

Bioinformatics

• Using IRGSP/TIGR rice genome assembly - link

• The sorghum project - link

• JGI - link

• Populus db - link

• Brachypodium.org - link

• Gramene - link

• NCBI - link

• The sorghum project - link

• NCBI - link

• Comparative grass genomics centre - link

• Populusdb - link

• PoplarDB - link

• AspenDB - link

• DFCI Poplar Gene Index - link

• Treenomix - link

• Arborea - link

• Sputnik - link

• NCBI - link

Microarrays

• Picme - link

• Affey - link

• Nimblegen - link

• POP2 - link

 Additional plant genome links - link

 Switch grass

• Sequence pending - link

Willow

• High synteny with poplar genome (Hanley et al., 2007)

• BEGIN: Developing resources - link

Comparative grass genomics

• Gramene (comparative grass genomics) - link

• JGI (phytozome) - link

• Germplast Resources Information Network (GRIN) - link

Maize (further C₄ model species)

• Resources - link

• Suggested co-linearity with Miscanthus (Hernndez et al., 2001)

Arabidopsis (the model plant)

• Resources - link